Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015954560.1_cds_XP_016493384.1_83503
CDS Infomation

[gene=LOC107812739] [db_xref=GeneID:107812739] [protein=BRCA1-associated RING domain protein 1] [protein_id=XP_016493384.1] [location=join(65910..66001,66872..66925,67050..67120,67477..67572,67671..67999,68424..68726,68835..68935,69755..69941,70048..70157,71989..72079,72542..72707,73486..73604,74240..74584)] [gbkey=CDS]
Sequence

ATGGCAGCGGAGACTCAAAGCATTTCTCGGTTACTAAACCCATTGGCATTTCATATTCAG
AAATTGGGTCTTGAACTCAAATGCCCTCTTTGCTTAAACTTGCTGAATAAACCTATGTTG
CTTCCATGCGATCATATTTTCTGCAACCTCTGTGTTCCAAGGTCTACCCAAGTTCAATGT
GAATGCCCTGTATGCAAACATCAATATGTTAATCAAGAAATAAGGGCAGTGCCTCATGTG
GAGAGTATGATAGCCATATTTAGAAGCTTAGATGCTACTTTCAATGCTAAAGTCTTTCAA
TTCAAATCTCCTGATGCTGGATGGTCATCGGAACAATATCCTATTTCTGTTAATCTTGAT
GATAAATCAAGAAATGAACAAACTGTCAAAGCCATAGTAAGCAGCAATGATCCAAACAAG
GAAATTAATAGGTGCAATGGACATGGAATTCCTTGGAATGGTGTGAGTCATTTGAGTCTT
TTGCCTTCTTCTGACAGAAAGGCAGACTTGAAAAATGAAAGGAATATTGCAGAGGAAATA
GATTTGAATCAATTGCAACAACAATCACCAGGCAGCTCTCATTCATCTGATAACAACAAA
GATATAGTTAAAGAGACAAGTGAACTGAGAGTAAGAAATAATGATATAAAAAGCCATACT
GCGAAGATGTCCGTAGAAGATAGCTCACACGTGGTTGAAGGTCTAGTGCACCACACAATT
AAGCATGAACATGTGTTTGAGGAAAGAGACTTGAAGAGACAAAAGAAATTAAGCTATGAA
TTGTCAGAGACGGTCTTGCAAAGTCATGCTATTACCAACTCTGACCGCTCTTTGGCATGT
AAATTGAGTGAATCTTCTTTGGTTGCTCAGCCAAAAGCAGTTTCAGATCAACATCTTCCG
AAAGGAAGTGTTTGTGCTTTCTGCCACACATCTAAGATAACAGAGGGAACTGGACCAATG
CTGCACTATGCAAATGGAAGGGAGGTGGTGGGAGATGTTACTTCACTTTCAAAAGCCATA
CCTGTGCACATGAAATGTATTGACTGGGCACCTCAAGTATATTATGATGGAGATACCTTG
AGAAATTTGGAGGCTGAATTGGCAAGAGCTGCAAAACTCAAGTGTAGTGGCTGTGGCCTA
AAGGGTGCAGCACTTGGCTGCCTCATGAAGTCATGCCGCAGGAGTTATCATATGCCTTGT
GCATTTGAAATCCAAGACTGCCGATGGGATTGTGACAACTTTGTAATGCTCTGCCCGAGT
CATAAATCTGTCAAATTTCCTAGTGAGAAGTCAAAGTCTAGGAAGCGTGCCAGTATGGAA
GCATGTCCAGAATCTGCTCCCATAACATCTGAGCGATTGAATTTTTGGGCAACATCATCA
GATGGACCCAAAGAATGGGTTCTATGTGGATCTGCTCTATCCTCAGAAGAGAAGTATATG
ATGGTCAAGTTTGCTAACATGTGCGGCGCAACTGTGTGCAAGACTTGGAACCCAAATGTC
ACCCATGTCATTGCAGCAACAGATGAAAAGGGTGCATGCACCAGAACACTGAAAGTTCTC
ATGGCAATTTTGGGTGGAAAATGGATCCTAACAATTGATTGGATAAAAGCCTGCATCGGA
GCAAATTGTCCTGTGATTGAAGAACCTTATGAAGTTAGCCTGGACAATCATGGCTGTTTT
GGTGGCCCTAAAGCTGGTAGGCTTAAGGCTTCATCCAATGCACCTAAACTTTTTGATGGT
TTCAAGTTTTATCTGAGTGGAGATTATGTAGCAGCTTACAAAAAGGACCTATTAGATCTA
GTCGAAAAGGGTGGAGGTTCCATCATTCACAGTAAGGAACAGCTGATTTACCAGATAGGT
TCTATGAAAGCAACTAACTCATCTTGTCTAGTTGTTTATAATCTTGATCCTCCACGCGGT
TGCATGTCTGGCGAAGATAGCAATGTTTTGCTGCACAGACAAGCTGAGGCTGAAGATTTG
GCCAAGCAAATTGGTTGTCAGGTCATTCAGCATACATGGATCCTGCAGTCTATTGCTGCA
TGTAAATTAGAACCTTTCTGCTGA

Peptide Sequence

PEP ID

XP_016493384.1
PEP Infomation

PREDICTED: BRCA1-associated RING domain protein 1 [Nicotiana tabacum]
Sequence

MAAETQSISRLLNPLAFHIQKLGLELKCPLCLNLLNKPMLLPCDHIFCNLCVPRSTQVQC
ECPVCKHQYVNQEIRAVPHVESMIAIFRSLDATFNAKVFQFKSPDAGWSSEQYPISVNLD
DKSRNEQTVKAIVSSNDPNKEINRCNGHGIPWNGVSHLSLLPSSDRKADLKNERNIAEEI
DLNQLQQQSPGSSHSSDNNKDIVKETSELRVRNNDIKSHTAKMSVEDSSHVVEGLVHHTI
KHEHVFEERDLKRQKKLSYELSETVLQSHAITNSDRSLACKLSESSLVAQPKAVSDQHLP
KGSVCAFCHTSKITEGTGPMLHYANGREVVGDVTSLSKAIPVHMKCIDWAPQVYYDGDTL
RNLEAELARAAKLKCSGCGLKGAALGCLMKSCRRSYHMPCAFEIQDCRWDCDNFVMLCPS
HKSVKFPSEKSKSRKRASMEACPESAPITSERLNFWATSSDGPKEWVLCGSALSSEEKYM
MVKFANMCGATVCKTWNPNVTHVIAATDEKGACTRTLKVLMAILGGKWILTIDWIKACIG
ANCPVIEEPYEVSLDNHGCFGGPKAGRLKASSNAPKLFDGFKFYLSGDYVAAYKKDLLDL
VEKGGGSIIHSKEQLIYQIGSMKATNSSCLVVYNLDPPRGCMSGEDSNVLLHRQAEAEDL
AKQIGCQVIQHTWILQSIAACKLEPFC

Transcript Sequence

Gene sequence data has not been registered.